PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094904.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 302aa    MW: 35052.9 Da    PI: 7.2763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094904.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065161185123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C  C+k ++  ++++ H+++  H
  XP_010094904.1 161 FYCDLCNKQYKLAMEFEAHLSSydH 185
                     78*****************987555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004437.6E-1764109IPR000467G-patch domain
PROSITE profilePS5017416.80266111IPR000467G-patch domain
PfamPF015852.6E-1567107IPR000467G-patch domain
SuperFamilySSF576676.95E-5147188No hitNo description
PfamPF121711.7E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDRRWYNGRQ ETGIRDKQHY DKEQAYEESL IEDLAEEFRL PSNHRPTENV DLDNVEQASL  60
DKQLNSSNVG YRLLQKMGWK GKGLGKDEQG IIEPIRSGIR DAKLGVGKQE EDDYFTSEEN  120
IQRRKLDVEV EETKEHAKKR EVLAEREQKI QSEVKEIHKV FYCDLCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKEMREMHGA SSRDDRQKRE QQRQEREMAK FAQMADARKQ QQLQQQQEES  240
SSAPVSAEAR SASVLGDQDQ RKALKFGFSS KSSTSKISFG SAAKKPKKAV ASVFGNDSDE  300
EK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094904.10.0G patch domain-containing protein 8
TrEMBLW9RKT10.0W9RKT1_9R
STRINGVIT_14s0060g00320.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428